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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41450452_41451210_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41450452 - 41451210
Intron Length:
759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
ASRTVTTNVTNPGPPVFLAG
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
79.1
24.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.8
0.76
0.8
82.6
33.4
Minor 5ss
35.8
-1.6
2.8
40.3
40.1
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
PTPRQ
Ensembl Gene ID:
ENSAPLG00000016187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016904
41447973 - 41553229
105257