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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41451438_41453895_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41451438 - 41453895
Intron Length:
2458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAAAGCT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTAGAC
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
LNPGTTYEITVAAENSAGLG
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
66.2
37.7
Major BPS
56.9
0.17
1.1
56.1
39.6
Major PPT
92.8
0.96
0.5
93.3
15.6
Minor 5ss
32.9
-1.9
3.5
49
46.7
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
PTPRQ
Ensembl Gene ID:
ENSAPLG00000016187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016904
41447973 - 41553229
105257