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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41458044_41461251_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41458044 - 41461251
Intron Length:
3208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATACT
5'SS Class:
strong_major
3'SS Sequence:
AATATTGTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCCAATATT
Flanking Amino Acid:
DSAIVRTPESVPEDPPQNFA
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
79.5
33.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
62.7
0.29
1.2
64.7
45.1
Minor 5ss
43.8
-0.7
2.7
60.9
43.5
Minor BPS
50.6
0.1
2.2
80.98
40.8

Associated Gene:

Gene:
PTPRQ
Ensembl Gene ID:
ENSAPLG00000016187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016904
41447973 - 41553229
105257