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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41466266_41468093_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
41466266 - 41468093
Intron Length:
1828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGTATCTG
5'SS Class:
weak_major
3'SS Sequence:
CATTTGATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTTCTCTCCATT
Flanking Amino Acid:
IQTASPVVFTNNQYAINILA
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.9
0.12
1
50.2
40.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
76.9
0.61
1
70
39.8
Minor 5ss
39.7
-1.2
3
50.3
41.7
Minor BPS
51.5
0.13
2
77.15
39.7

Associated Gene:

Gene:
PTPRQ
Ensembl Gene ID:
ENSAPLG00000016187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016904
41447973 - 41553229
105257