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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41468247_41468365_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41468247 - 41468365
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTGT
5'SS Class:
major
3'SS Sequence:
GTTTTTGTTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TTTTTGTTGAAG
Flanking Amino Acid:
SVLTVRTHEQVPSSVQNISY
Intron Amino Acid Position:
590

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
72.3
39.7
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
74.2
0.54
1.1
75.2
38.8
Minor 5ss
38.5
-1.3
3.4
56.5
47.6
Minor BPS
50.4
-0.1
2.2
66.96
41

Associated Gene:

Gene:
PTPRQ
Ensembl Gene ID:
ENSAPLG00000016187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016904
41447973 - 41553229
105257