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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41472239_41473924_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41472239 - 41473924
Intron Length:
1686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGGTCTTTTACA
Flanking Amino Acid:
FPLLVRTSETVPDSAPESIT
Intron Amino Acid Position:
780

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
84.9
26.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.7
0.71
0.8
74
36.4
Minor 5ss
34
-1.8
2.8
39.2
40.5
Minor BPS
64.8
0.46
1.6
71.79
40.2

Associated Gene:

Gene:
PTPRQ
Ensembl Gene ID:
ENSAPLG00000016187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016904
41447973 - 41553229
105257