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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41477386_41481022_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41477386 - 41481022
Intron Length:
3637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATATAATTAATA
Flanking Amino Acid:
GIILYYTVYVWNKISKRSVN
Intron Amino Acid Position:
913

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
83.3
29.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
86.5
0.82
0.7
85.9
28.3
Minor 5ss
44
-0.6
3.2
62.3
43.4
Minor BPS
57.8
0.24
1.7
69.38
36.2

Associated Gene:

Gene:
PTPRQ
Ensembl Gene ID:
ENSAPLG00000016187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016904
41447973 - 41553229
105257