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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41482856_41489292_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41482856 - 41489292
Intron Length:
6437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTATTATTT
Flanking Amino Acid:
FKNNSGIFIQNFTSSGNYSD
Intron Amino Acid Position:
1016

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.3
32.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
94.3
1
0.5
93.3
15.5
Minor 5ss
48.4
-0.1
2.8
67.4
44
Minor BPS
56.7
0.29
1.8
77.56
39

Associated Gene:

Gene:
PTPRQ
Ensembl Gene ID:
ENSAPLG00000016187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016904
41447973 - 41553229
105257