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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41489459_41489935_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41489459 - 41489935
Intron Length:
477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TTATCTCTCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTTGTTTATCT
Flanking Amino Acid:
EIIDVYTDQDIPDGSVENLV
Intron Amino Acid Position:
1071

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.1
31.1
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
77.5
0.62
0.8
73.1
31.6
Minor 5ss
33.9
-1.8
3.2
41.6
40.4
Minor BPS
64.5
0.53
2
87.39
38.7

Associated Gene:

Gene:
PTPRQ
Ensembl Gene ID:
ENSAPLG00000016187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016904
41447973 - 41553229
105257