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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41490227_41490534_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41490227 - 41490534
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTGTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTTCTTATTT
Flanking Amino Acid:
LSLHIRTDEDVPESAPIIKK
Intron Amino Acid Position:
1168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
83.1
0.75
0.8
80.8
31.2
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
69.5
0.69
1.5
82.89
39.2

Associated Gene:

Gene:
PTPRQ
Ensembl Gene ID:
ENSAPLG00000016187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016904
41447973 - 41553229
105257