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Intron Name: Anas_platyrhynchos_platyrhynchos_1_41516000_41518067_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41516000 - 41518067

Intron Length:

2068

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTGTATT

5'SS Class:

major

3'SS Sequence:

ATGTTTGTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTGAT

U12 Branch Point Sequence:

ACTGATTTAAGT

Flanking Amino Acid:

SPVIVSTFEAVPEDPPNNIT

Intron Amino Acid Position:

1662

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.7

1.1

84.7

32.4

Major BPS

74.7

0.61

0.9

63.4

35.6

Major PPT

80.1

0.68

77.4

41.2

Minor 5ss

44.1

-0.6

2.5

60.5

43.9

Minor BPS

49.2

0.02

1.9

66.5

44.6

Associated Gene:

Gene:

PTPRQ

Ensembl Gene ID:

ENSAPLG00000016187

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016904

41447973 - 41553229

105257