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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41519303_41519849_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41519303 - 41519849
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATCTC
5'SS Class:
major
3'SS Sequence:
TGTTTAAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
CTTTGTTTAAAA
Flanking Amino Acid:
IQLKITMDIKEPPRPKKKPA
Intron Amino Acid Position:
1766

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
71.2
38.9
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
65.6
0.35
1.1
60.7
43
Minor 5ss
44.2
-0.6
2.9
61.5
43.4
Minor BPS
59.9
0.31
1.9
71.99
40.5

Associated Gene:

Gene:
PTPRQ
Ensembl Gene ID:
ENSAPLG00000016187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016904
41447973 - 41553229
105257