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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41521944_41526147_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41521944 - 41526147
Intron Length:
4204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AATCTATTAAAT
Flanking Amino Acid:
SDFSDPVKTLGEGLSGRSVE
Intron Amino Acid Position:
1918

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
81.4
32.1
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
85.3
0.79
0.8
80.2
31.8
Minor 5ss
32.5
-2
3.1
40.7
45.3
Minor BPS
54.4
0.22
1.7
71.91
37.8

Associated Gene:

Gene:
PTPRQ
Ensembl Gene ID:
ENSAPLG00000016187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016904
41447973 - 41553229
105257