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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41526248_41527075_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41526248 - 41527075
Intron Length:
828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TCACTATGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCCACTAATA
Flanking Amino Acid:
LLVAAVYAFARIRQKQKEGG
Intron Amino Acid Position:
1951

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
67.8
0.4
1
66.1
39.6
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
56.8
0.21
1.9
75.29
35.5

Associated Gene:

Gene:
PTPRQ
Ensembl Gene ID:
ENSAPLG00000016187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016904
41447973 - 41553229
105257