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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41527205_41534944_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41527205 - 41534944
Intron Length:
7740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TCATTACTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
AGGTCTCTAATT
Flanking Amino Acid:
DLELKDERFTRPISKKSFLQ
Intron Amino Acid Position:
1994

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
78.4
37.9
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
80.1
0.68
0.9
74
35.4
Minor 5ss
43.4
-0.7
2.9
58.5
45.8
Minor BPS
57.9
0.32
1.7
71.69
39.6

Associated Gene:

Gene:
PTPRQ
Ensembl Gene ID:
ENSAPLG00000016187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016904
41447973 - 41553229
105257