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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41535027_41541763_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41535027 - 41541763
Intron Length:
6737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGTTGC
5'SS Class:
major
3'SS Sequence:
TATTCCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTCCTTTACA
Flanking Amino Acid:
NNLKFQEEFSELPKFLEDLA
Intron Amino Acid Position:
2022

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
66.2
40.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.5
0.82
0.7
80.5
31.2
Minor 5ss
47.1
-0.3
2.5
61.5
43.4
Minor BPS
78.2
0.88
1.5
84.76
34.4

Associated Gene:

Gene:
PTPRQ
Ensembl Gene ID:
ENSAPLG00000016187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016904
41447973 - 41553229
105257