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Intron Name: Anas_platyrhynchos_platyrhynchos_1_41543340_41546860_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41543340 - 41546860

Intron Length:

3521

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTAAGTAGA

5'SS Class:

major

3'SS Sequence:

TTCTCTTTCTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATTAAA

U12 Branch Point Sequence:

TATGCATTAAAC

Flanking Amino Acid:

SDYINASYVSGYLCPNEFIA

Intron Amino Acid Position:

2078

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.1

0.59

1.1

71.3

40.3

Major BPS

70.2

0.5

71.6

30.1

Major PPT

84.1

0.77

0.6

84.3

23.6

Minor 5ss

-1.4

2.8

52.3

44.3

Minor BPS

58.5

0.25

1.8

70.45

40.2

Associated Gene:

Gene:

PTPRQ

Ensembl Gene ID:

ENSAPLG00000016187

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016904

41447973 - 41553229

105257