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Intron Name: Anas_platyrhynchos_platyrhynchos_1_41546996_41547098_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41546996 - 41547098

Intron Length:

103

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

CATCTCCCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

TTATTGCTAATT

Flanking Amino Acid:

MLTQCFEKGRIRCHQYWPED

Intron Amino Acid Position:

2123

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.4

0.91

0.9

30.2

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

76.9

0.61

0.8

30.4

Minor 5ss

41.4

-1

2.9

49.9

46.4

Minor BPS

49.8

0.06

2.3

76.93

39.9

Associated Gene:

Gene:

PTPRQ

Ensembl Gene ID:

ENSAPLG00000016187

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016904

41447973 - 41553229

105257