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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41547225_41549117_F

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41547225 - 41549117
Intron Length:
1893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTATATTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ACTGCCTTATTT
Flanking Amino Acid:
WTIRDLKIERHGDCMMVRQC
Intron Amino Acid Position:
2165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
68.8
43.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.8
0.81
0.8
80.3
36.7
Minor 5ss
33.1
-1.9
2.8
33
41.8
Minor BPS
60.2
0.4
1.7
73.74
43.8

Associated Gene:

Gene:
PTPRQ
Ensembl Gene ID:
ENSAPLG00000016187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016904
41447973 - 41553229
105257