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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41550513_41552785_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41550513 - 41552785
Intron Length:
2273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACGA
5'SS Class:
strong_major
3'SS Sequence:
TCACATCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTTTGTCTAATC
Flanking Amino Acid:
SERMCMVQNLAQYIFLHQCV
Intron Amino Acid Position:
2260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
64.4
41.6
Major BPS
77.3
0.68
1
81.5
27
Major PPT
71.3
0.48
0.9
64.5
36
Minor 5ss
31.5
-2.1
3.1
36.3
42.5
Minor BPS
56
0.17
2.1
74.53
36.7

Associated Gene:

Gene:
PTPRQ
Ensembl Gene ID:
ENSAPLG00000016187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016904
41447973 - 41553229
105257