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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41552910_41553191_F

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41552910 - 41553191
Intron Length:
282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TGTTATATATCT
Flanking Amino Acid:
QKMDSLDAMEGDVELEWEET
Intron Amino Acid Position:
2301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
91.7
0.94
0.6
88.8
20.4
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
49
0.01
2
74.83
41.6

Associated Gene:

Gene:
PTPRQ
Ensembl Gene ID:
ENSAPLG00000016187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016904
41447973 - 41553229
105257