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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41576045_41576197_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41576045 - 41576197
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGCACG
5'SS Class:
major
3'SS Sequence:
CCCCCTGCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACGCAG
U12 Branch Point Sequence:
TTCCCCTCTCCC
Flanking Amino Acid:
AFSFSPKQANGSDFLGTCGS
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
68.3
42.6
Major BPS
41.9
-0.5
1.6
49.1
38
Major PPT
66.3
0.37
0.8
60
29.5
Minor 5ss
42.1
-0.9
2.8
54.9
42.2
Minor BPS
37.7
-0.9
3.6
60.61
44.4

Associated Gene:

Gene:
MYF6
Ensembl Gene ID:
ENSAPLG00000002254
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002253
41575525 - 41576806
1282