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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41636604_41653717_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41636604 - 41653717
Intron Length:
17114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCACTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTATACTGACTT
Flanking Amino Acid:
AAVQPLTLDRDVARAIELLE
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
41.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82.9
0.74
0.8
82.1
28.7
Minor 5ss
36.7
-1.5
3.3
47.6
48
Minor BPS
51.7
0.13
1.9
74.93
41.6

Associated Gene:

Gene:
LIN7A
Ensembl Gene ID:
ENSAPLG00000017756
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044916
41635642 - 41654044
18403