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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41753963_41757323_F

Intron Information:

Intron Rank:
131429
Intron Class:
major
Intron Phase:
Intron Coordinates:
41753963 - 41757323
Intron Length:
3361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.1
69.1
41.9
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
38.3
-1.3
3.3
50
46.2
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020589
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019904
41753715 - 41757472
3758