Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41793594_41793862_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41793594 - 41793862

Intron Length:

269

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

GCTTCTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTCAC

U12 Branch Point Sequence:

CTTCCCTTCTCT

Flanking Amino Acid:

LRLPAPSPAPVD*

Intron Amino Acid Position:

777

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.9

0.82

0.9

81.7

31.9

Major BPS

72.4

0.56

73.5

32.5

Major PPT

84.7

0.78

0.8

76.4

37.6

Minor 5ss

33.7

-1.9

3.4

49.9

46.4

Minor BPS

44.1

-0.3

3.6

77.16

45.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029393

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037527

41792585 - 41796272

3688

ENSAPLT00000041513

41792428 - 41796272

3845