Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_417955_418604_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

417955 - 418604

Intron Length:

650

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTT|GTGAGTAAT

5'SS Class:

major

3'SS Sequence:

CGTTTTATTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTTAT

U12 Branch Point Sequence:

TGATTTTTAGTT

Flanking Amino Acid:

CRLSTMNLLLDLFFKYTWNN

Intron Amino Acid Position:

376

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

77.8

31.2

Major BPS

78.7

0.71

1.2

71.7

44.6

Major PPT

82.2

0.72

0.9

73.8

40.5

Minor 5ss

34.5

-1.8

2.9

48.3

41.8

Minor BPS

59.2

0.37

1.5

72.88

38.5

Associated Gene:

Gene:

PPP6R2

Ensembl Gene ID:

ENSAPLG00000003046

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048408

381682 - 447727

66046

ENSAPLT00000003179

381682 - 447727

66046