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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41800018_41803443_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41800018 - 41803443
Intron Length:
3426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTAAATAATT
Flanking Amino Acid:
LAPVLTAFVTKPNRALDSCS
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
84.1
26.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.1
0.77
0.7
79.5
26.1
Minor 5ss
36.6
-1.5
2.9
46.1
36.1
Minor BPS
56
0.27
2
83.6
36.7

Associated Gene:

Gene:
RANGAP1
Ensembl Gene ID:
ENSAPLG00000006767
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007089
41799948 - 41816429
16482