About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41803566_41805394_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41803566 - 41805394
Intron Length:
1829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTCTTCTCATCC
Flanking Amino Acid:
RLLIHMGLLKSEEKIKTVPS
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.7
37
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
26.2
-2.7
2.9
29.6
43.4
Minor BPS
50.5
-0
1.8
62.83
42.7

Associated Gene:

Gene:
RANGAP1
Ensembl Gene ID:
ENSAPLG00000006767
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007089
41799948 - 41816429
16482