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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41807112_41807460_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41807112 - 41807460
Intron Length:
349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTGAG
5'SS Class:
major
3'SS Sequence:
CTTTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TTATTTCTATTT
Flanking Amino Acid:
PKCSVLIAQQTDTSDVEKVV
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.2
64.4
41.8
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
87.2
0.84
0.7
84.6
30.3
Minor 5ss
27
-2.6
3.1
31.3
43
Minor BPS
49.6
0.05
1.9
72.66
38.9

Associated Gene:

Gene:
RANGAP1
Ensembl Gene ID:
ENSAPLG00000006767
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007089
41799948 - 41816429
16482