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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41808705_41809237_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
41808705 - 41809237
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCCACAAATCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTTAA
U12 Branch Point Sequence:
CATCTCTTAAGT
Flanking Amino Acid:
KAELEKLDLNGNCLGEEGCE
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
69.9
0.49
1
61.3
37
Major PPT
54.3
0.1
0.9
44.2
35.5
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
61.3
0.43
1.7
74.02
42.7

Associated Gene:

Gene:
RANGAP1
Ensembl Gene ID:
ENSAPLG00000006767
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007089
41799948 - 41816429
16482