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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41810920_41811083_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41810920 - 41811083
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
ATATCTATACCT
Flanking Amino Acid:
TEKGAVAMAETLKSLRQIEV
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
74.8
38.1
Major BPS
77.3
0.68
1
81.5
27
Major PPT
75.8
0.58
1
69.1
41.8
Minor 5ss
35.1
-1.7
3.2
49.2
47.1
Minor BPS
54.9
0.23
1.9
76.18
40.3

Associated Gene:

Gene:
RANGAP1
Ensembl Gene ID:
ENSAPLG00000006767
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007089
41799948 - 41816429
16482