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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41811243_41812002_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41811243 - 41812002
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CATCCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTATTCATCT
Flanking Amino Acid:
GATALAEAFGIIGTLEEVHM
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
78.8
35.5
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
81.4
0.71
0.8
72.6
37.2
Minor 5ss
36.6
-1.5
2.6
39.1
38.9
Minor BPS
55
0.23
2
81.24
40.4

Associated Gene:

Gene:
RANGAP1
Ensembl Gene ID:
ENSAPLG00000006767
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007089
41799948 - 41816429
16482