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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41813315_41813987_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41813315 - 41813987
Intron Length:
673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
TCCCTCCCACCC
Flanking Amino Acid:
RLRSEIPPALISLGDALITA
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
50
0
1.2
61.8
35.9
Major PPT
87
0.83
0.7
81.4
30.6
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
40.3
-0.7
1.9
47.95
41.8

Associated Gene:

Gene:
RANGAP1
Ensembl Gene ID:
ENSAPLG00000006767
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007089
41799948 - 41816429
16482