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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41815098_41816317_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41815098 - 41816317
Intron Length:
1220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAA
U12 Branch Point Sequence:
TGGTAGTTAAAA
Flanking Amino Acid:
QSLKLNTAEDAEEVIKQIEE
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.1
31.1
Major BPS
61.4
0.28
1.1
67.9
34.4
Major PPT
84.2
0.77
0.8
77.7
36.7
Minor 5ss
29.9
-2.3
3.3
35
42.5
Minor BPS
47.6
-0.1
2.3
62.54
43.1

Associated Gene:

Gene:
RANGAP1
Ensembl Gene ID:
ENSAPLG00000006767
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007089
41799948 - 41816429
16482