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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41840445_41840770_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
41840445 - 41840770
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGAGCT
5'SS Class:
major
3'SS Sequence:
CAACTCCCCAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCTTGCCCAACT
Flanking Amino Acid:
SLAEGSPYPLSLVQGTIPTN
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
68
35.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
53.9
0.09
1
52.4
31
Minor 5ss
34.9
-1.7
3.5
50.5
40.9
Minor BPS
49.5
0.04
2.3
76.94
45.3

Associated Gene:

Gene:
ZC3H7B
Ensembl Gene ID:
ENSAPLG00000005880
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044047
41833325 - 41860024
26700
ENSAPLT00000006154
41833325 - 41860680
27356