Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41842172_41842953_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41842172 - 41842953

Intron Length:

782

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGTGGTG

5'SS Class:

major

3'SS Sequence:

TGGTTTTGCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAGTGAT

U12 Branch Point Sequence:

GAGCTCAGAAGT

Flanking Amino Acid:

ADVPRCSGAKVSLGGVSHPA

Intron Amino Acid Position:

357

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.5

0.46

1.1

60.6

44.2

Major BPS

64.7

0.36

1.2

55.1

42.1

Major PPT

72.8

0.51

68.8

41.9

Minor 5ss

31.5

-2.1

3.8

49.3

Minor BPS

41.3

-0.5

1.8

53.22

41.2

Associated Gene:

Gene:

ZC3H7B

Ensembl Gene ID:

ENSAPLG00000005880

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044047

41833325 - 41860024

26700

ENSAPLT00000006154

41833325 - 41860680

27356