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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4187231_4192576_F

Intron Information:

Intron Rank:
140262
Intron Class:
major
Intron Phase:
Intron Coordinates:
4187231 - 4192576
Intron Length:
5346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ACCAAAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
TAAATCTGAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.5
1.05
0.7
92.2
16.5
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
62.1
0.27
1
55.7
42.7
Minor 5ss
32
-2.1
2.8
41.5
45.1
Minor BPS
59.7
0.28
1.5
66.36
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025446
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020318
4186717 - 4194858
8142