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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41886564_41888010_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41886564 - 41888010
Intron Length:
1447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGATAGA
5'SS Class:
major
3'SS Sequence:
CTGTTTTTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TCCTGCTGAACG
Flanking Amino Acid:
YQQSEAASSTESPLQNERNT
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
71.3
40.5
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
77.7
0.62
1
72.6
42.4
Minor 5ss
33.1
-1.9
3
42.3
44.5
Minor BPS
52.3
-0
2
59.75
47.8

Associated Gene:

Gene:
TEF
Ensembl Gene ID:
ENSAPLG00000005838
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006045
41886204 - 41889015
2812