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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41926422_41928356_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41926422 - 41928356
Intron Length:
1935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCGGC
5'SS Class:
major
3'SS Sequence:
GTTTTACTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TGTTCTGTAACC
Flanking Amino Acid:
LIFCRKQAGVGDGKCVICDS
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
57.9
41.8
Major BPS
68
0.45
1
57.8
39
Major PPT
85.2
0.79
0.8
82.1
34.6
Minor 5ss
31.7
-2.1
3.3
41.6
45.3
Minor BPS
65.8
0.48
2
78.83
36.8

Associated Gene:

Gene:
PHF5A
Ensembl Gene ID:
ENSAPLG00000021195
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021753
41924978 - 41928408
3431