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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4192646_4193575_F

Intron Information:

Intron Rank:
140263
Intron Class:
major
Intron Phase:
Intron Coordinates:
4192646 - 4193575
Intron Length:
930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTAAATAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.4
0.57
1
70.5
39
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
53.4
0.1
2
74.97
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025446
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020318
4186717 - 4194858
8142