Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41928623_41933452_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41928623 - 41933452

Intron Length:

4830

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGCGTGGG

5'SS Class:

major

3'SS Sequence:

CTCCTCTTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACTAAC

U12 Branch Point Sequence:

GCAGCACTAACA

Flanking Amino Acid:

PYCLLAASLRHALNGGIRRY

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.6

0.46

1.1

54.2

Major BPS

64.5

0.36

65.2

28.2

Major PPT

84.1

0.77

0.7

32.5

Minor 5ss

25.1

-2.9

3.1

22.5

37.5

Minor BPS

45.8

-0.3

55.12

Associated Gene:

Gene:

ACO2

Ensembl Gene ID:

ENSAPLG00000005198

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035839

41928013 - 41948310

20298

ENSAPLT00000005407

41928013 - 41948583

20571