Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41933596_41934697_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41933596 - 41934697

Intron Length:

1102

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGGGG

5'SS Class:

strong_major

3'SS Sequence:

CTTGTCTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTAAAA

U12 Branch Point Sequence:

GGGTGTAAAATT

Flanking Amino Acid:

LEKNINIVRKRLDRPLTLSE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

67.8

43.5

Major BPS

0.2

1.2

65.3

38.6

Major PPT

77.7

0.62

0.8

69.4

36.9

Minor 5ss

28.6

-2.5

3.5

37.8

47.1

Minor BPS

40.1

-0.6

2.1

53.67

42.3

Associated Gene:

Gene:

ACO2

Ensembl Gene ID:

ENSAPLG00000005198

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035839

41928013 - 41948310

20298

ENSAPLT00000005407

41928013 - 41948583

20571