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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41934957_41937170_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
41934957 - 41937170
Intron Length:
2214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACTGTT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTGTGACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
GTGTTACTAACA
Flanking Amino Acid:
GGEKDLRRAKDINQEVYNFL
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1.1
81.3
32.8
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
57.3
0.17
1
50.6
42.8
Minor 5ss
38.7
-1.3
3.4
57.8
46.8
Minor BPS
50
-0
1.9
65.88
40.1

Associated Gene:

Gene:
ACO2
Ensembl Gene ID:
ENSAPLG00000005198
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035839
41928013 - 41948310
20298
ENSAPLT00000005407
41928013 - 41948583
20571