Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4193651_4194758_F

Intron Information:

Intron Rank:

140264

Intron Class:

major

Intron Phase:

Intron Coordinates:

4193651 - 4194758

Intron Length:

1108

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TTGTTCATTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTATTCAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

100

1.18

0.6

100

Major BPS

96.5

1.15

0.6

34.2

Major PPT

84.5

0.78

0.8

82.2

34.1

Minor 5ss

41.7

-0.9

2.9

59.7

44.8

Minor BPS

58.4

0.13

1.8

68.49

39.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025446

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020318

4186717 - 4194858

8142