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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41943901_41944577_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41943901 - 41944577
Intron Length:
677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGA
5'SS Class:
major
3'SS Sequence:
CCTTCTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
CCTTCTTTCACA
Flanking Amino Acid:
ACGPCIGQWDRKDIKKGEKN
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69
38.3
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
83.7
0.76
0.7
78.7
26.9
Minor 5ss
35.4
-1.7
3.3
47.1
48.3
Minor BPS
62.9
0.4
1.8
70.26
42.8

Associated Gene:

Gene:
ACO2
Ensembl Gene ID:
ENSAPLG00000005198
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035839
41928013 - 41948310
20298
ENSAPLT00000005407
41928013 - 41948583
20571