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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41944690_41944827_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41944690 - 41944827
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AAGCCTTTAAAT
Flanking Amino Acid:
ETHAFVTSPEIVTALSIAGT
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
90.8
0.92
0.7
88.9
28.1
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
61.4
0.44
1.4
70.61
39.8

Associated Gene:

Gene:
ACO2
Ensembl Gene ID:
ENSAPLG00000005198
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035839
41928013 - 41948310
20298
ENSAPLT00000005407
41928013 - 41948583
20571