Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41946644_41947472_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41946644 - 41947472

Intron Length:

829

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGCTG

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTGTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCTCAA

U12 Branch Point Sequence:

TCTTTTGTCACA

Flanking Amino Acid:

PVPDTARYYKKMGVKWAVIG

Intron Amino Acid Position:

654

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

69.5

42.7

Major BPS

0.45

1.2

71.6

36.4

Major PPT

83.7

0.76

0.8

79.1

32.9

Minor 5ss

28.9

-2.4

3.3

37.6

47.1

Minor BPS

47.2

-0.2

2.3

65.59

41.9

Associated Gene:

Gene:

ACO2

Ensembl Gene ID:

ENSAPLG00000005198

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035839

41928013 - 41948310

20298

ENSAPLT00000005407

41928013 - 41948583

20571