Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41947606_41947915_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41947606 - 41947915

Intron Length:

310

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGCTGC

5'SS Class:

major

3'SS Sequence:

TTGTTCTCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACCTGAC

U12 Branch Point Sequence:

TACACCTGACCG

Flanking Amino Acid:

IITKSFARIHETNLKKQGLL

Intron Amino Acid Position:

698

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

60.5

41.4

Major BPS

60.1

0.25

35.6

Major PPT

86.2

0.81

0.8

81.5

30.6

Minor 5ss

39.2

-1.2

50.7

Minor BPS

48.3

-0.2

1.9

54.34

Associated Gene:

Gene:

ACO2

Ensembl Gene ID:

ENSAPLG00000005198

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035839

41928013 - 41948310

20298

ENSAPLT00000005407

41928013 - 41948583

20571