Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_419530_423247_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

419530 - 423247

Intron Length:

3718

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGGGAT

5'SS Class:

major

3'SS Sequence:

TCTCTCCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGGTTAT

U12 Branch Point Sequence:

TATGTTGCTACT

Flanking Amino Acid:

LDAWEANDKIQAEGGMRRGN

Intron Amino Acid Position:

465

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.5

0.51

1.1

67.1

38.3

Major BPS

66.2

0.4

1.3

57.4

49.1

Major PPT

86.2

0.81

0.7

80.7

24.5

Minor 5ss

33.1

-1.9

3.7

51.9

Minor BPS

39.3

-0.7

2.3

44.1

Associated Gene:

Gene:

PPP6R2

Ensembl Gene ID:

ENSAPLG00000003046

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048408

381682 - 447727

66046

ENSAPLT00000003179

381682 - 447727

66046