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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41953186_41954742_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41953186 - 41954742
Intron Length:
1557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGTAAC
U12 Branch Point Sequence:
TTTTCTTTCAAG
Flanking Amino Acid:
FPGDGASHTKVHFRYVVFHP
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
74.1
37.2
Major BPS
61.9
0.3
1.2
63.6
40.3
Major PPT
77.4
0.62
1
75.7
38.5
Minor 5ss
59.1
0.31
2.3
74.3
42
Minor BPS
61
0.2
1.9
72.3
40.7

Associated Gene:

Gene:
POLR3H
Ensembl Gene ID:
ENSAPLG00000005063
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005219
41950529 - 41956149
5621